2023
Ettich J, Wittich C, Moll JM, Behnke K, Floss DM, Reiners J, Christmann A, Lang PA, Smits SHJ, Kolmar H, Scheller J (2023) . J Biol Chem 299(11):105270 Respiratory syncytial virus-approved mAb Palivizumab as ligand for anti-idiotype nanobody-based synthetic cytokine receptors
Offen N, Filatova A, Nuber UA (2023) Stem Cell Reports https://doi.org/10.1016/j.stemcr.2023.10.007 Enrichment of FGF8-expressing cells from neurally induced human pluripotent stem cell cultures.
Riahi K, Dirba I, Ablets Y, Filatova A, Sultana SN, Adabifiroozjaei, Molina-Luna L, Nuber U, Gutfleisch (2023) Nanoscale Adv 5:5859-5869 Surfactant-driven optimization of iron-based nanoparticle synthesis: a study on magnetic hyperthermia and endothelial cell uptake.
Kraus L, Duchardt-Ferner E, Bräuchle E, Fürbacher S, Kelvin D, Marx H, Boussebayle A, Maurer LM, Bofill-Bosch C, Wöhnert J, Suess B (2023) Nucleic Acids Res. 2023 Oct 4:gkad767 Development of a novel tobramycin dependent riboswitch
Schoenfeld K, Harwardt J, Habermann J, Elter A, Kolmar H (2023) . Front Immunol 14:1258700 Conditional activation of an anti-IgM antibody-drug conjugate for precise B cell lymphoma targeting
Bitsch P, Baum ES, Beltrán Hernández I, Bitsch S, Harwood J, Oliveira S, Kolmar H (2023) . Pharmaceutics 15(10):2374 Penetration of Nanobody-Dextran Polymer Conjugates through Tumor Spheroids
Lerma Romera JA, Meyners C, Rupp N, Hausch F, Kolmar H (2023) . Protein Eng Des Sel doi: 10.1093/protein/gzad014 A protein engineering approach towards understanding FKBP51 conformational dynamics and mechanisms of ligand binding
Kemp P, weber W, Desczyk C, Kaufmann M, Panthel J, Wörmann J, Stein V (2023) ACS Omega 42:39562–39569 Dissecting the Permeability of the Escherichia coli Cell Envelope to a Small Molecule Using Tailored Intensiometric Fluorescent Protein Sensors
Sinzger-D’Angelo M, Startceva S& Koeppl H (2023) Journal of Mathematical Biology 87:43 Bye bye, linearity, bye: quantification of the mean for linear CRNs in a random environment
Minagawa J, Dann M (2023) Plants 12(2):265 Extracellular CahB1 from Sodalinema gerasimenkoae IPPAS B-353 Acts as a Functional Carboxysomal β-Carbonic Anhydrase in Synechocystis sp. PCC6803
Engelmann N, Schwarz T, Kubaczka E, Hochberger C, Koeppl H (2023) ACS Synthetic Biology, S. 446-459:2161-5063 Context-Aware Technology Mapping in Genetic Design Automation
Fritschen A, Blaeser A (2023) , 268, Darmstadt, Elsevier, Universitäts- und Landesbibliothek Darmstadt ISSN 1878-5905 Biosynthetic, biomimetic, and self-assembled vascularized Organ-on-a-Chip systems Biomaterials
Fritschen A, Acedo Mestre M, Scholpp S, Blaeser A (2023) Frontiers in Bioengineering and Biotechnology 11 Influence of the physico-chemical bioink composition on the printability and cell biological properties in 3D-bioprinting of a liver tumor cell line
Gouveia MG, Wesseler JP, Ramaekers J, Weder C, Scholten PBV, Bruns N (2023) Chemical Society Reviews . 52(2)728-778:51 Polymersome-based protein drug delivery – quo vadis?
Redondo A, Bast LK, Djeghdi K, Airoldi M, Jang D, Korley LTJ, Steiner U, Bruns N, Gunkel I (2023) Advanced Materials Interfaces. 10, 9, 9 2201979 Rendering polyurethane hydrophilic for efficient cellulose reinforcement in melt-spun nanocomposite fibers
Wesseler JP, Cameron GM, Cormack PAG, Bruns N (2023) (wird in neuem Tab geöffnet) Polymer Chemistry. 14(13)1456-1468 :13 Donor-acceptor Stenhouse adduct functionalised polymer microspheres
Belluati, A, Harley I, Lieberwirth I, Bruns N (2023) (wird in neuem Tab geöffnet) Small 8:2303384 An outer membrane‐inspired polymer coating protects and endows Escherichia coli with novel functionalities
Russell S, Bruns N (2023) (wird in neuem Tab geöffnet) Macromolecular Rapid Communications. 15:2300120 Encapsulation of fragrances in micro‐ and nano‐capsules, polymeric micelles, and polymersomes
Ritzmann D, Jahn M, Heck S, Jung C, Cesetti T, Couturier N, Rudolf R, Reuscher N, Buerger C, Rauh O, Fauth T (2023) . Cell Calcium 111:102715 The Ca2+ channel TRPV4 is dispensable for Ca2+ influx and cell volume regulation during hypotonic stress response in human keratinocyte cell lines
Poggio E, Vallese F, Hartel AJW, Morgenstern TJ, Kanner SA, Rauh O, Giamogante F, Barazzuol L, Shepard KL, Colecraft HM, Clarke OB, Brini M, Calì T (2023) Cell Death & Disease 14(297) Perturbation of the host cell Ca2+ homeostasis and ER-mitochondria contact sites by the SARS-CoV-2 structural proteins E and M
Höler S, Degreif D, Stix F, Yang S, Gao S, Nagel G, Moroni A, Thiel G, Bertl A, Rauh O (2023) PLoS ONE 18(4):e0280711 Tailoring baker’s yeast Saccharomyces cerevisiae for functional testing of channelrhodopsin.
Bohn S, Hexemer L, Huang Z, Strohmaier L, Lenhardt S, Legewie S, Loewer A (2023) . Proc Natl Acad Sci U S A. 120(10):e2210891120 State- and stimulus-specific dynamics of SMAD signaling determine fate decisions in individual cells
Konrath, F, Loewer, A & Wolf, J (2023) Methods Mol. Biol. (Clifton, NJ) 2634:267–284 Resolving Crosstalk Between Signaling Pathways Using Mathematical Modeling and Time-Resolved Single Cell Data.
Cichos S, Schätzlein E, Wiesmann-Imilowski N, Blaeser A, Henrich D, Frank J, Drees P, Gercek E, Ritz U (2023) Int J Bioprint. 11;9(5):751 A new 3D-printed polylactic acid-bioglass composite for bone tissue engineering induces angiogenesis in vitro and in ovo.
Klein T, Funke F, Rossbach O, Lehmann G, Vockenhuber M, Medenbach J, Suess B, Meister G, Babinger P (2023) Int J Mol Sci. 16;24(14):11536 Investigating the Prevalence of RNA-Binding Metabolic Enzymes in E. coli.
Kelvin D, Suess B (2023) RNA Biol. 20(1):457-468 Tapping the potential of synthetic riboswitches: reviewing the versatility of the tetracycline aptamer.
Krumbach JH, Bauer D, Sharifzadeh AS, Saponaro A, Lautenschläger R, Lange K, Rauh O, DiFrancesco D, Moroni A, Thiel G, Hamacher K (2023) J Gen Physiol. 2;155(10):e202313364 Alkali metal cations modulate the geometry of different binding sites in HCN4 selectivity filter for permeation or block.
Lipinski B, Unmuth L, Arras P, Becker S, Bauer C, Toleikis L, Krah S, Doerner A, Yanakieva D, Boje AS, Klausz K, Peipp M, Siegmund V, Evers A, Kolmar H, Pekar L, Zielonka S (2023) MAbs. 15(1):2236265 Generation and engineering of potent single domain antibody-based bispecific IL-18 mimetics resistant to IL-18BP decoy receptor inhibition.
Oliviero C, Hinz SC, Grzeschik J, Hock B, Kolmar H, Hagens G (2023) Methods Mol Biol 343-359 Cell Line Development Using Targeted Gene Integration into MAR-Rich Landing Pads for Stable Expression of Transgenes.
Carrara SC, Bogen JP, Fiebig D, Grzeschik J, Hock B, Kolmar H (2023) Methods Mol Biol 2681:291-311 Bulk Reformatting of Antibody Fragments Displayed on the Surface of Yeast Cells to Final IgG Format for Mammalian Production.
Lerma Romero JA, Kolmar H (2023) Methods Mol Biol 2681:249-274 Accessing Transient Binding Pockets by Protein Engineering and Yeast Surface Display Screening.
Yanakieva D, Vollmer L, Kumar S, Becker S, Toleikis L, Pekar L, Kolmar H, Zielonka S, Krah S (2023) Methods Mol Biol 2681:213-229 One-Pot Droplet RT-OE-PCR for the Generation of Natively Paired Antibody Immune Libraries.
Deutscher R, Karagöz MS, Purder PL, Kolos J, Meyners C, Sugiarto WO, Krajczy P, Tebbe F, Geiger T, Ünal C, Hellmich U, Steinert M, Felix Hausch F (2023) ChemBioChem e202300442 Bicyclic FKBP ligands inhibit Legionella pneumophila infection by LpMipdependent and LpMip independent mechanisms
Knaup FH, Meyners C, Sugiarto WO, Wedel S, Springer M, Walz C, Geiger TM, Schmidt M, Sisignano M, Hausch F (2023) Journal of Medical Chemistry 66(8):5965–5980 Structure-Based Discovery of a New Selectivity-Enabling Motif for the FK506-Binding Protein 51
Harwardt J, Carrara SC, Bogen JP, Schoenfeld K, Grzeschik J, Hock B, Kolmar H (2023) Front Immunol 14:1170042 Generation of a symmetrical trispecific NK cell engager based on a two-in-one antibody
Kunzmann P, Müller TD, Greil M, Krumbach JH, Anter JM, Bauer D, Islam F, Hamacher K (2023) BMC Bioinformatics 24:236 Biotite: New tools for a versatile Python bioinformatics library
Mikolei JJ, Stanzel M, Pardehkorram R, Lehn R, Ceolin M, Andrieu-Brunsen A (2023) Advanced Material Interfaces 10:2300211 Fluid Flow Control in Cotton Threads with MesoporousSilica Coatings
Mikolei JJ, Richter D, Pardehkhorram R, Helbrecht C, Schabel S, Meckel T, Biesalski M, Ceolind M, Andrieu-Brunsen A (2023) Nanoscale 15:9094-9105 Nanoscale pores introduced into paper via mesoporous silica coatings using sol–gel chemistry
Despot L, Andrieu-Brunsen A (2023) Adv. Mater. Interfaces 2202456 Effects of the Polymer Amount and pH on Proton Transport in Mesopores
Förster C, Lehn R, Saritas EM, Andrieu-Brunsen A (2023) Angew Chem e202217806 Laser Writing of Block-Copolymer Images into Mesopores Using SBDC-Initiated Visible-Light-Induced Polymerization
Varol HS, Förster C, Andrieu-Brunsen A (2023) ,Adv Mater Interfaces 2201902 Ligand-Binding Mediated Gradual Ionic Transport in Nanopores
Förster C, Lehn R, Andrieu-Brunsen A (2023) Small 2207762 Automated Multi- and Block-Copolymer Writing in Mesoporous Films Using Visible-Light PET-RAFT and a Microscope
C. Förster, A. Andrieu-Brunsen (2023) , Chem. Commun. 59:1554 – 1568 Recent developments in visible light induced polymerization towards its application to nanopores
Scheidt J, Diener A, Maiworm M, Müller K-R, Findeisen R, Driessens K, Tautz FS, Wagner C (2023) Journal of Physical Chemistry C, ACS Publications, ISSN 1932-7447 Concept for the Real-Time Monitoring of Molecular Configurations during Manipulation with a Scanning Probe Microscope
Pohlodek J, Alsmeier H, Morabito B, Schlauch C, Savchenko A, Findeisen R (2023) American Control Conference (ACC 2023), pp. 603-608, IEEE, 2023 American Control Conference, San Diego, USA, 31.05. – 02.06.2023, ISBN 979-8-3503-2806-6 Stochastic Model Predictive Control Utilizing Bayesian Neural Networks.
Schurig R, Himmel A, Mešanović A, Braatz RD, Findeisen R (2023) American Control Conference (ACC 2023), pp. 3809-3814, IEEE, 2023 American Control Conference, San Diego, USA, 31.05.-02.06.2023, ISBN 979-8-3503-2806-6 Estimating Parameter Regions for Structured Parameter Tuning via Reduced Order Subsystem Models.
Schurig R, Himmel A, Findeisen R (2023) IEEE Control Systems Letters, IEEE, e-ISSN 2475-1456 Towards Grassmannian Dimensionality Reduction in MPC.
Schaeffer J, Gasper P, Garcia-Tamayo E, Gasper R, Adachi M, Gaviria-Cardona JP, Montoya-Bedoya S, Bhutani A, Schiek A, Goodall R, Findeisen R, Braatz RD, Engelke S (2023) Journal of The Electrochemical Society, 170(6):1-14 Machine Learning Benchmarks for the Classification of Equivalent Circuit Models from Electrochemical Impedance Spectra.
Peters S, PJ, Findeisen R (2023) ATZ worldwide, pp. 62-65, Springer, ISSN 0001-2785, e-ISSN 2192-9076 Quantifying uncertainties along the automated driving stack.
Bethge J, Pfefferkorn M, Rose A, Peters J, Findeisen R (2023) Electrical Engineering and Systems Science, arXiv Model Predictive Control with Gaussian-Process-Supported Dynamical Constraints for Autonomous Vehicles.
Matschek J, Bethge J, Findeisen R (2023) Robotics, arXiv Safe Machine-Learning-supported Model Predictive Force and Motion Control in Robotics.
Wan Y, Shen DE, Lucia S, Findeisen R, Braatz RD (2023) IEEE Transactions on Automatic Control, 68 (1), pp. 470-477, IEEE, ISSN 0018-9286 A Polynomial Chaos Approach to Robust H_infinity Static Output-Feedback Control with Bounded Truncation Error.
Kögel M, Ibrahim M, Kallies C, Findeisen R (2023) International Journal of Robust and Nonlinear Control, pp. 1-19, John Wiley & Sons Ltd., ISSN 1049-8923, e-ISSN 1099-1239 Safe hierarchical model predictive control and planning for autonomous systems.
Shi Z, Chen H, Yu S, Findeisen R, Guo H (2023) International Journal of Robust and Nonlinear Control, pp. 1-20, John Wiley and Sons Ltd Nonlinear model predictive control for autonomous vehicle drifting.
Domes R, Frosch T (2023) Functional Theory Analytical Chemistry 95(19):7630-7639 Investigations on the Novel Antimalarial Ferroquine in Biomimetic Solutions Using Deep UV Resonance Raman Spectroscopy and Density
Wolf S, Popp J, Frosch T (2023) Sensors and Actuators B: Chemical 375(132949):3 Multifocal hyperspectral Raman imaging setup for multi-well plates
Domes C, Popp J, Hagel S, Pletz MW, Frosch T (2023) Analyst 148:3057-3064 Towards therapeutic drug monitoring of antibiotic levels–analyzing the pharmacokinetics of levofloxacin using DUV-resonance Raman spectroscopy
Cervera J, Ramirez P, Nasir S, Ali M, Ensinger W, Z. Siwy S, Mafe S (2023) Bioelectrochemistry 152:108445 Cation pumping against a concentration gradient in conical nanopores characterized by load capacitors
2022
Kramat J, Suess B (2022) Methods Mol Biol. 2022;2518:157-177 Efficient Method to Identify Synthetic Riboswitches Using RNA-Based Capture-SELEX Combined with In Vivo Screening
Fernengel B, Drossel B (2022) , J. Phys. A: Mathematical and Theoretical 55, 115201. Obtaining the long-term behavior of master equations with finite state space from the structure of the associated state transition network
Pardehkhorram R, Andrieu-Brunsen A (2022) Chem. Commun., invited Feature Article, 58, 5188-5204 Pushing the limits of nanopore transport performance by polymer functionalization
Schneider S, Brodrecht M, Breitzke H, Wissel T, Buntkowsky G, Varol HS, Brilmayer R, Andrieu-Brunsen A Vogel M (2022) . J Chem Phys in press Local and diffusive dynamics of LiCl aqueous solutions in pristine and modified silica nanopores
Rauh O, Opper J, Sturm M, Drexler N, Scheub DD, Hansen UP, Thiel G, Schroeder I (2022) J of Mol Biol 434(9):167522 Role of Ion Distribution and Energy Barriers for Concerted Motion of Subunits in Selectivity Filter Gating of a K+ Channel
Rauh O, Schroeder I and Thiel G (2022) (wird in neuem Tab geöffnet). Biophys. J. 121(3) Plasticity of gating in pore-only potassium channels
Espinel-Ríos S, Bettenbrock K, Klamt, S, and Findeisen R (2022) AIChE J. 68. Maximizing batch fermentation efficiency by constrained model‐based optimization and predictive control of adenosine triphosphate turnover.
Sheludko YV, Gerasymenko IM, Herrmann FJ, Warzecha H (2022) Transgenic Research volume 31, pages 351–368 Evaluation of biotransformation capacity of transplastomic plants and hairy roots of Nicotiana tabacum expressing human cytochrome P450 2D6
Bauer D, Wissmann J, Moroni A, Thiel G, Hamacher K (2022) Function, Volume 3, Issue 3, 2022, zqac019 Weak Cation Selectivity in HCN Channels Results From K+-Mediated Release of Na+ From Selectivity Filter Binding Sites
Weber W, Roeder M, Probanowski T, Yang J, Abujubara H, Koeppl H, Tietze A, Stein V (2022) ACS Synth. Biol. 2022, 11, 6, 2070–2079 Functional Nanopore Screen: A Versatile High-Throughput Assay to Study and Engineer Protein Nanopores in Escherichia coli
Lindner N, Blaeser A (2022) Frontiers in Bioengineering and Biotechnology, 10, Frontiers, e-ISSN 2296-4185, Scalable Biofabrication: A Perspective on the Current State and Future Potentials of Process Automation in 3D-Bioprinting Applications
Caronna F, Glimpel N, Paar G, Thomas Gries, Blaeser A, Do K, Dolan EB, Ronan W (2022) Biomaterials Science Manufacturing, characterization, and degradation of a poly (lactic acid) warp-knitted spacer fabric scaffold as a candidate for tissue engineering applications
Karakaya E, Bider F, Frank A, Teßmar J, Schöbel L, Forster L, Schrüfer S, Schmidt H, Schubert DW, Blaeser A, Boccaccini AR, Detsch R (2022) s Gels 8 (4), 206 Targeted Printing of Cells: Evaluation of ADA-PEG Bioinks for Drop on Demand Approache
Salg GA, Poisel E, Neulinger-Munoz M, Gerhardus J, Cebulla D, Bludszuweit-Philipp C, Vieira V, Nickel F, Herr I, Blaeser A, Giese NA, Hackert T, Kenngott HG (2022) Journal of Tissue Engineering 13, 20417314221091033 Toward 3D-bioprinting of an endocrine pancreas: A building-block concept for bioartificial insulin-secreting tissue
Brumm P, Fritschen A, Doß L, Dörsam E, Blaeser A (2022) Biomedical Materials 17 (4), 045012 Fabrication of biomimetic networks using viscous fingering in flexographic printing
Schätzlein E, Kicker C, Söhling N, Ritz U, Neijhoft J,Henrich D, Frank J, Marzi I, Blaeser A (2022) Polymers 14 (12), 2389 3D-Printed PLA-Bioglass Scaffolds with Controllable Calcium Release and MSC Adhesion for Bone Tissue Engineering
Fritschen A, Bell AK, Königstein I, Stühn L, Stark RW, Blaeser A (2022) Biomaterial Science Investigation and comparison of resin materials in transparent DLP-printing for application in cell culture and organs-on-a-chip
Bauer B, Emonts C, Bonten L, Annan R, Merkord F, Vad T, Idrissi A, Gries T, Blaeser A (2022) Fibers 10(3):23 Melt-Spun, Cross-Section Modified Polycaprolactone Fibers for Use in Tendon and Ligament Tissue Engineering
Wollschläger JO, Maatz R, Albrecht FB, Klatt A, Heine S, Blaeser (2022) Gels 8(2):94 Scaffolds for Cultured Meat on the Basis of Polysaccharide Hydrogels Enriched with Plant-Based Proteins
Rocabert E, Muench F, Fries M, Beckmann B, Loewe K, Vieyra H, Katter M, Barcza A, Ensinger W, Gutfleisch O (2022) Electrachimica Acta, Vol. 434, 141200 Electrochemical corrosion study of La (Fe11, 6-xSix1, 4Mnx) H1, 5 in diverse chemical environments
Bräuer P, Muench F, Stojkovikj S, Gupta S, Mayer M, Ensinger W, Roth C, El-Nagar GA (2022) ACS Appl. Nano Mater. 5, 8 360, 119592 Shape-Controlled Electroless Plating of Hetero-Nanostructures: AgCu-and AgNi-Decorated Ag Nanoplates on Carbon Fibers as Catalysts for the Oxygen Evolution
Perez-Grau J, Cervera J, Nasir S, Mubarak A, Ensinger W, Ramirez P, Mafe S (2022) Journal of Molecular Liquids, Vol. 360, 119592 Additivity of ionic currents in mixed electrolyte solutions and confined geometries
Ramirez P, Cervera J, Manzanares J, Nasir S, Mubarak A, Ensinger W, Mafe S (2022) Journal of Chemical Physics, Vol. 157, 144702 Electrical conductance of conical nanopores: symmetric and assymmetric salts and their mixtures
Amin KM, Krois K, Muench F, Etzold BJM, Ensinger W (2022) Journal of Materials Chemistry A, 2022, pp. 1-16. Royal Society of Chemistry, ISSN 2050-7488 Hierarchical pipe cactus-like Ni/NiCo-LDH core–shell nanotube networks as a self-supported battery-type electrode for supercapacitors with high volumetric energy density
Groeb M, Hageluken L, Groeb J, Ensinger W (2022) Materials 15, 7 2409 Experimental Analysis of Ductile Cutting Regime in Face Milling of Sintered Silicon Carbide
Hossain UH, Jantsen G, Muench F, Kunz U, Ensinger W (2022) 33, 24 (2022) 245603 Increasing the structural and compositional diversity of ion-track templated 1D nanostructures through multistep etching, plastic deformation, and deposition Nanotechnology
Nowroozi MA, Waidha AI, Jacob M, van Aken PA, Predel F, Ensinger W, Clemens O (2022) ChemistryOpen 11, 3 202100274 Towards Recycling of LLZO Solid Electrolyte Exemplarily Performed on LFP/LLZO/LTO Cells
Amin KM, Boettcher T, Scheuerlein MC, Ensinger W (2022) (wird in neuem Tab geöffnet) in Proceedings of the 7th World Congress on Recent Advances in Nanotechnology (RAN'22), ICNNFC 173, Int. ASET Inc., Ottawa 2022 Exotemplate-based Fabrication of 1-dimensional Hybrid Nanostructures for Catalysis and Sensing
Rubab A, Baig N, Sher M, Ali M, Ul-Hamid A, Jabeen N, Khan LU, Sohail M (2022) ChemNanoMat 2022, 8, e202100428 Synthesis and Characterization of a Carbon-Supported Cobalt Nitride Nano-Catalyst
Froehlich K, Scheuerlein MC, Nasir S, Ali M, Ensinger W (2022) Nanotechnology 2021, Vol. 33, 045301 Enhancement of heavy ion track-etching in polyimide membranes with organic solvents
Haider MHA, Nasir S, Amin KM, Ali M, Ramirez P, Cervera J, Mafe S, Ensinger W (2022) Materials Today Energy, Vol. 23 100909 Osmotic energy harvesting with soft-etched nanoporous polyimide membranes
Abbasi MA, Amin KM, Ali M, Zulqurnain Ali A, Atif M, Ensinger W, Khalid W (2022) Journal of Environmental Chemical Engineering 10, 1 107078 Synergetic effect of adsorption-photocatalysis by GO-CeO2 nanocomposites for photodegradation of doxorubicin
Wolf S, Domes R, Merian A, Domes C, Frosch T (2022) Analytical Chemistry 94 (29), 10346-10354 2 Parallelized Raman Difference Spectroscopy for the Investigation of Chemical Interactions
L Wang, W Zheng, F Vitale, X Zhang, X Li, Y Ji, Z Liu, O Ghaebi, CT Plass, Domes T, Frosch T, Soavi G, Wendler E, Zhang Y, Ronning C (2023) Advanced Functional Materials 32 (22), 2111338 18 2022 Wide‐Bandgap Double Perovskites with Multiple Longitudinal‐Optical Phonon Scattering
Blohm A, Kumar S, Knebl A, Herrmann M, Küsel K, Popp J, Frosch T (2022) Analytical and bioanalytical chemistry 414 (1), 601-611 Activity and electron donor preference of two denitrifying bacterial strains identified by Raman gas spectroscopy
2021
Winterstein L, Kukovetz K, Hansen U, Schroeder I, Van Etten JL, Moroni A, Thiel G, Rauh O (2021) . Journal of General Physiology 153 (2): e202012731. Distinct lipid bilayer compositions have general and protein-specific effects on K+ channel function
Carvalho‐de‐Souza JL, Saponaro A, Bassetto Jr. CAZ, Rauh O, Schroeder I, Franciolini F, Catacuzzeno L, Bezanilla F, Thiel G, Moroni A (2021) Advances in Physics 5(1): 1978317 Experimental challenges in ion channel research: uncovering basic principles of permeation and gating in potassium channels.
Gabriel TS, Hansen U, Urban M, Drexler N, Winterstein T, Rauh O, Thiel G, Kast SM, Schroeder I (2021) . Frontiers in Physiology 12: 737834. Asymmetric interplay between K+ and blocker and atomistic parameters from physiological experiments quantify K+ channel blocker release
Kläsener K, Jellusova J, Andrieux G, Salzer U, Böhler C, Steiner SN, Albinus JB, Cavallari M, Süß B, Voll RE, Boerries M, Wollscheid B, Reth M (2021) PNAS 118 (7) e2021342118 CD20 as a gatekeeper of the resting state of human B cells
Langer K, Müller-Längle A, Wempe J, Laube B (2021) . Frontiers in pharmacology 12 769046. Analysis of M4 Transmembrane Segments in NMDA Receptor Function: A Negative Allosteric Modulatory Site at the GluN1 M4 is Determining the Efficiency of Neurosteroid Modulation
Gallo F, Korsak B, Müller C, Hechler T, Yanakieva D, Avrutina O, Kolmar H, Pahl A (2021) , J Med Chem. 64: 4117. Enhancing the Pharmacokinetics and Antitumor Activity of an a-Amanitin-Based Small-Molecule Drug Conjugate via Conjugation with an Fc Domain
Hamm M, Drossel B (2021) Scientific Reports 11, 1-12. The concerted emergence of well-known spatial and temporal ecological patterns in an evolutionary food web model in space
Khalil A, Rostami P, Auernhammer GK, Andrieu-Brunsen A (2021) , Adv. Mater. Interfaces, 8, 2100252. Mesoporous Coatings with Simultane-ous Light-Triggered Transition of Water Imbibition and Droplet Coalescence
Laucirica G, Terrones YT, Cayóna V, Cortez ML, Toimil-Molares ME, Trautmann C, Marmisollé W, Azzaroni O (2021) Trends in Analytical Chemistry, 144, 116425 Biomimetic Solid-State Nanochannels for Chemical and Biological Sensing Applications
Schladt T, Engelmann N, Kubaczka E, Hochberger C and Koeppl H (2021) . ACS Synth. Biol. 10, 3316–3329. Automated Design of Robust Genetic Circuits: Structural Variants and Parameter Uncertainty
Peinetti AS, Lake RJ, Cong W, Cooper L, Wu Y, Ma Y, Pawel GT, Toimil-Molares ME, Trautmann C, Rong L, Marinas B, Azzaroni O, Lu Y (2021) . Sci Adv 7, eabh2848. Direct detection of human adenovirus or SARS-CoV-2 with ability to inform infectivity using DNA aptamer-nanopore sensors
Gräwe A, Ranglack J, Weyrich A and Stein, V (2021) . Methods Enzymol. 647, 231–255. Synthetic protein switches: Combinatorial linker engineering with iFLinkC
Gräwe A and Stein V (2021) . Trends in Biotechnology 39, 731–744. Linker Engineering in the Context of Synthetic Protein Switches and Sensors
Elter A, Yanakieva D, Fiebig D, Hallstein K, Becker S, Betz U, and Kolmar H (2021) . Front. Immunol. 12, 715719. Protease-Activation of Fc-Masked Therapeutic Antibodies to Alleviate Off-Tumor Cytotoxicity
Winterstein, LM, Kukovetz K, Hansen, UP, Schroeder I, Van Etten JL, Moroni A, Thiel G, Rauh O (2021) J. Gen. Physiol. 153. Distinct lipid bilayer compositions have general and protein-specific effects on K+ channel function.
Gerasymenko I, Sheludko YV, Fuertes IN, Schmidts V, Steinel L, Haumann E, Warzecha H (2021) ChemBioChem 23(1) e202100465 Engineering of a Plant Isoprenyl Diphosphate Synthase for Development of Irregular Coupling Activity
Schmidt M, Schroeder I, Bauer D, Thiel G, Hamacher K (2021) Eur Biophys. J., 50:37-57 Inferring functional units in ion channel pores via relative entropy
Mathony J, and Niopek D (2021) . Adv Biol (Weinh) 5, e2000181. Enlightening Allostery: Designing Switchable Proteins by Photoreceptor Fusion
Güllülü O, Hehlgans S, Mayer B, Gößner I, Petraki C, Hoffmann M, Dombrowsky M, Kunzmann P, Hamacher K, Strebhardt K, Fokas E, Rödel C, Münch F, Rödel F (2021) Cancer Research 81:2304-17 A spatial and functional interaction of a heterotetramer Survivin-DNA-PKcs complex in DNA damage response
Bolze H, Riewe L, Bunjes H, Dietzel A, Burg T (2021) Chemical Engineering & Technology 44(9):1641-1650 Continuous Production of Lipid Nanoparticles by Ultrasound-Assisted Microfluidic Antisolvent Precipitation
Lehr FX, Kuzembayeva A, Bailey ME, Kleindienst W, Kabisch J, Koeppl H (2021) ACS Synthetic Biology Functionalizing Cell-Free Systems with CRISPR-Associated Proteins: Application to RNA-Based Circuit Engineering
Hoffmann MD; Mathony J, Upmeier zu Belzen J, Hartevald Z, Aschenbrenner S, Stengl C, Grimm D, Correira BE, Eils R, Niopek D (2021) Nucleic Acids Research 49(5) e29 Optogenetic control of Neisseria meningitidis Cas9 genome editing using an engineered, light-switchable anti-CRISPR protein
Rauh O, Kukovetz K, Winterstein L, Introini B, Thiel G (2021) Methods in Enzymology 652:293-318 Combining in vitro translation with nanodisc technology and functional reconstitution of channels in planar lipid bilayers
Bogen JP, Carrara SY, Fiebig D, Grzeschik J, Hock B, Kolmar H (2021) Front Immunol 12:669496 Design of a Trispecific Checkpoint Inhibitor and Natural Killer Cell Engager Based on a 2 + 1 Common Light Chain Antibody Architecture
Liebich VJ, Avrutina O, Habermann J, Hillscher LM, Langhans M, Meckel T, Biesalski M, Kolmar H (2021) Biomacromolecules 22(7):2954-2962 Toward Fabrication of Bioactive Papers: Covalent Immobilization of Peptides and Proteins
Saponaro A, Bauer D, Giese H, Swuec P, Porro A, Gasparri F, Sharifzadeh AS, Chaves-Sanjuan A, Alberio L, Parisi G, Cerutti G, Clarke OB, Hamacher K, Colecraft HM, Mancia F. Hendrickson WA, Siegelbaum SA, DiFrancesco D, Bolognesi M, Thiel G, Santoro B, Moroni A (2021) Molecular Cell 81(14):2929-2943 Gating movements and ion permeation in HCN4 pacemaker channels
Kaiser C, Schneider J, Groher F, Suess B, Wachtveitl J (2021) Nucleic Acids Research 49(7):3661-3671 What defines a synthetic riboswitch? – Conformational dynamics of ciprofloxacin aptamers with similar binding affinities but varying regulatory potentials
Born J, Weitzel K, Suess B, Pfeifer F (2021) Front Microbiol 12:696181 A Synthetic Riboswitch to Regulate Haloarchaeal Gene Expression
Worring A, Mayer BE, Hamacher K (2021) GECCO '21: Proceedings of the Genetic and Evolutionary Computation Conference 296–304 Genetic algorithm niching by (Quasi-)infinite memory
Prangemaier T, Reich C, Wildner C, Koeppl H (2021) Medical Image Computing and Computer Assisted Intervention (MICCAI) Multi-StyleGAN: Towards Image-Based Simulation of Time-Lapse Live-Cell Microscopy
Karava M, Gockel P, Kabisch J (2021) Sustainable Energy Fuels 5:1727-1733 Bacillus subtilis spore surface display of photodecarboxylase for the transformation of lipids to hydrocarbons
Ensinger W (2021) (wird in neuem Tab geöffnet)Proceedings of the 6th World Congress on Recent Advances in Nanotechnology (RAN'21) Paper No. NDDTE 106 A New Generation of Biomolecular Sensors Based on Polymeric Ion Conducting Nanopores for Medical Diagnostics
Nasir S, Ali M, Ramirez P, Froehlich K, Cervera J, Mafe S, Ensinger W (2021) Journal of Membrane Science 635:119505 Ionic conduction through single-pore and multipore polymer membranes in aprotic organic electrolytes
Duznovic I, Gräwe A, Weber W, Müller LK, Ali M, Ensinger W, Tietze A, Stein V (2021) Small 2101066 Ultrasensitive and Selective Protein Recognition with Nanobody-Functionalized Synthetic Nanopores
Glinkowska M, Waldminghaus T, Riber L (2021) Front Microbiol 12:633466 Editorial: Bacterial Chromosomes Under Changing Environmental Conditions
Zimmermann M, Nguyen M, Schultheiss CM; Kolmar H, Zimmer A (2021) Biotechnology and Bioengineering 118(5):1818-1831 Use of 5-Thio-L-Fucose to modulate binding affinity of therapeutic proteins
John D, Stanzel M, Andrieu-Brunsen A (2021) Advanced Functional Materials 31(20):2009732 Surface Plasmons and Visible Light Iniferter Initiated Polymerization for Nanolocal Functionalization of Mesoporous Separation Layers
Hillscher LM, Liebich VJ, Avrutina O, Biesalski M, Kolmar H (2021) ChemTexts 7(14) Functional paper-based materials for diagnostics
Izdebska-Podsiadly J, Dörsam E (2021) Bulletin of Material Science 44(79) Storage stability of the oxygen plasma-modified PLA film
Elter A, Bock T, Spiehl D, Russo G, Hinz SC, Bitsch S, Baum E, Langhans M, Meckel T, Dörsam E, Kolmar H, Schwall G (2021) Scientific Reports 11(7880) Carbohydrate binding module-fused antibodies improve the performance of cellulose-based lateral flow immunoassays
Schmidt M, Hamacher K (2021) Phys. Rev. E 103, 042418 Identification of biophysical interaction patterns in direct coupling analysis
Ramirez P, Prerz-Grau JJ, Cervera J, Nasir S, Ali M, Ensinger W, Mafe S (2021) Appl Phys Lett 118:181903 Negative differential resistance and threshold-switching in conical nanopores with KF solutions
Baumann L, Bruder S, Kabisch J, Boles E, Oreb M (2021) ACS Synth Biol 10(5):1077-1086 High-Throughput Screening of an Octanoic Acid Producer Strain Library Enables Detection of New Targets for Increasing Titers in Saccharomyces cerevisiae
Carrara SC, Fiebig D, Bogen JP, Grzeschik J, Hock B, Kolmar H (2021) Antibodies 10(2):18 Recombinant Antibody Production Using a Dual-Promoter Single Plasmid System
Engel AJ, Kithil M, Langhans M, Rauh O, Cartolano M, van Etten JL, Moroni A, Thiel G (2021) Cells 10(5):1128 Codon Bias Can Determine Sorting of a Potassium Channel Protein
Ulrich N, Spende A, Burr L, Sobel N, Schubert I, Hess C, Trautmann C, Toimil-Molares ME (2021) Nanomaterials 11, 1874; Conical Nanotubes Synthesized by Atomic Layer Deposition in Etched Ion-Track Nanochannels
2020
Kukovetz K, Hertel B, Schvarcz CR, Saponaro A, Manthey M, Burk U, Greiner T, Steward GF, Van Etten JL, Moroni A, Thiel G, Rauh O (2020) . Viruses 12(10):1107. A Functional K+ Channel from Tetraselmis Virus 1, a Member of the Mimiviridae
Aschenbrenner S, Kallenberger S, Hoffmann MD, Huck A, Eils R, Niopek D (2020) Sci Adv 6(6):eaay018 Coupling Cas9 to artificial inhibitory domains enhances CRISPR-Cas9 target specificity.
Benary M, Bohn S, Lüthen M, Nolis IK, Blüthgen N, Loewer A (2020) . Cell Reports 31, 107514. Disentangling Pro-mitotic Signaling during Cell Cycle Progression using Time-Resolved Single-Cell Imaging
Engelmann N, Linzner D, Koeppl H (2020) . Proceedings of the 37th International Conference on Machine Learning (ICML), 119:2912-2921. Continuous-time Bayesian networks with clocks
Macarrón Palacios A, Grzeschik J, Deweid L, Krah S, Zielonka S, Rösner T, Peipp M, Valerius T, Kolmar H (2020) , Front Immunol., 11: 560244. Specific Targeting of Lymphoma Cells Using Semisynthetic Anti-Idiotype Shark Antibodies
Drossel B (2020) . Quantum Studies: Mathematics and Foundations 7, 217-231. What condensed matter physics and statistical physics teach us about the limits of unitary time evolution
Khalil A, Zimmermann M, Bell AK, Kunz U, Hardt S, Kleebe HJ, Stark RW, Stephan P, Andrieu-Brunsen A (2020) J. Colloid Interf. Sci., 560, 369. Insights into the interplay of wetting and transport in mesoporous silica films
Brilmayer R, Kübelbeck S, Khalil A, Brodrecht M, Kunz U, Kleebe HJ, Buntkowsky G, Baier G, Andrieu-Brunsen A (2020) , Adv. Mat. Interf., 1901914. Influence of nanoconfinement on the pKa of polyelectrolyte functionalized silica mesopores
Konrath F, Mittermeier A, Cristiano E, Wolf J and Loewer A (2020) . PLoS Comput. Biol. 16, e1007901. A systematic approach to decipher crosstalk in the p53 signaling pathway using single cell dynamics
Gräwe A., Ranglack J, Weber W and Stein V (2020a) . Current Opinion in Biotechnology 63, 1–7. Engineering artificial signalling functions with proteases
Zimmermann M, Kolmar H, Zimmer A (2020) Journal of Biotechnology 335:27-38 S-Sulfocysteine – Investigation of cellular uptake in CHO cells
Fritschen A, Blaeser A (2020) Biomaterials 268:120556 Biosynthetic, biomimetic, and self-assembled vascularized Organ-on-a-Chip systems
Engel AJ, Winterstein L, Kithil M, Langhans M, Moroni A, Thiel G (2020) Cells 9(11):2507 Light-Regulated Transcription of a Mitochondrial-Targeted K+ Channel
Mathony J, Niopek D (2020) Advanced Biology 5(5):2000181 Enlightening Allostery: Designing Switchable Proteins by Photoreceptor Fusion
Brilmayer R, Förster C, Zhao L, Andrieu-Brunsen A (2020) Current Opinion in Biotechnology 63:200-209 Recent trends in nanopore polymer functionalization
Sozhamannan S, Waldminghaus T (2020) Environmental Microbiology 22(10):4123-4132 Exception to the exception rule: synthetic and naturally occurring single chromosome Vibrio cholerae
Wilkens D, Meusinger R, Hein S, Simon J (2020) Environmental Microbiology 23(3):1407-1421 Sequence analysis and specificity of distinct types of menaquinone methyltransferases indicate the widespread potential of methylmenaquinone production in bacteria and archaea
Hoff J, Daniel B, Stukenberg D, Thuonyi BW, Waldminghaus T, Fritz G (2020) Environmental Microbiology 22(10):4394-4408 Vibrio natriegens: an ultrafast-growing marine bacterium as emerging synthetic biology chassis
Mathony J, Harteveld Z, Schmelas C, Upmeier Zu Belzen J, Aschenbrenner S, Sun W, Hoffmann MD, Stengl C, Scheck A, Georgeon S, Rosset S, Wang Y, Grimm D, Eils R, Niopek D (2020) . Nat. Chem. Biol. 16, 725–730. Computational design of anti-CRISPR proteins with improved inhibition potency
Doçi G, Fuchs L, Kharbanda Y, Schickling P, Zulkower V, Hillson N, Oberortner E, Swainston N, Kabisch J (2020) Synthetic Biology, ysaa011, https://doi.org/10.1093/synbio/ysaa011 DNA Scanner: a web application for comparing DNA synthesis feasibility, price, and turnaround time across vendors
Li Y, Rehbock C, Nachev M, Stamm J, Sures B, Blaeser A, Barcikowski S (2020) Nanotechnology 31(40):405703. doi: 10.1088/1361-6528/ab94da Matrix-specific mechanism of Fe ion release from laser-generated 3D-printable nanoparticle-polymer composites and their protein adsorption properties
Schäfer B, Emonts C, Glimpel N, Ruhl T, Obrecht AS, Jockenhoevel S, Gries T, Beier JP, Blaeser A (2020) Materials (Basel) 13(16):E3518. doi: 10.3390/ma13163518 Warp-Knitted Spacer Fabrics: A Versatile Platform to Generate Fiber-Reinforced Hydrogels for 3D Tissue Engineering
Kunzmann, P.,Mayer, B.E. Hamacher, K. (2020) BMC Bioinformatics 21(209) Substitution matrix based color schemes for sequence alignment visualization
Brunner JD, Jakob RP, Schulze T, Neldner Y, Moroni A, Thiel G, Maier S, Schenck S (2020) eLIFE Structural basis for ion selectivity in TMEM175 K+ channels
Herzog N, Hübner H, Rüttiger C, Gallei M, Andrieu-Brunsen A (2020) Langmuir doi.org/10.1021/acs.langmuir.0c00245 Functional Metalloblock Copolymers for the Preparation and In Situ Functionalization of Porous Silica Films
Tran MH, Brilmayer R, Liu L, Zhuang HL, Hess C, Andrieu-Brunsen A, Birkel CS (2020) ACS Appl. Nano Mater Synthesis of a Smart Hybrid MXene with Switchable Conductivity for Temperature Sensing
Prangemeier T, Lehr F, Schoeman RM, Koeppl H (2020) Current Opinion in Biotechnology 63:167-176 Microfluidic platforms for the dynamic characterisation of synthetic circuitry
Müller LK, Duznovic I, Tietze D, Weber W, Ali M, Stein V, Ensinger W, Tietze A (2020) Chem. Eur. J. 10.1002/chem.202001160 Ultrasensitive and selective copper (II) detection: introducing a bioinspired and robust sensor
Bernhard M, Diefenbach M, Biesalski M, Laube B (2020) ACS Sens 5(1) 234-241 Electrical Sensing of Phosphonates by Functional Coupling of Phosphonate Binding Protein PhnD to Solid-State Nanopores
Ochs M, Maohammadi R, Vogel N, Andrieu-Brunsen A (2020) Small 1906463 Wetting‐Controlled Localized Placement of Surface Functionalities within Nanopore
Grau FX, Jaeger J, Groher F, Suess B, Muller YA (2020) Nucleic Acids Research, gkaa083 The complex formed between a synthetic RNA aptamer and the transcription repressor TetR is a structural and functional twin of the operator DNA–TetR regulator complex
Gräwe A, Ranglack J, Weyrich A, Stein V (2020) Nucleic Acids Research, gkz1210, https://doi.org/10.1093/nar/gkz1210 iFLinkC: an iterative functional linker cloning strategy for the combinatorial assembly and recombination of linker peptides with functional domains
Sheludko YV, Volk J, Brandt W, Warzecha H (2020) ChemBioChem 21(14):1976-1980 Expanding the Diversity of Plant Monoterpenoid Indole Alkaloids Employing Human Cytochrome P450 3A4
Engel F, Ossipova E, Jakobsen P-J, Vockenhuber M-P, Suess B (2020) Front Microbiol 10:3121 sRNA scr5239 Involved in Feedback Loop Regulation of Streptomyces coelicolor Central Metabolism
Jenewein T, Kanner SA, Bauer D, Hertel B, Colecraft HM; Moroni A, Thiel G, Kauferstein S (2020) Channels 14(1):163-174 The mutation L69P in the PAS domain of the hERG potassium channel results in LQTS by trafficking deficiency
Baalmann M, Neises L, Bitsch S, Schneider H, Deweid L, Werther P, Ilkenhans N, Wolfring M, Ziegler MJ, Wilhelm J, Kolmar H, Wombacher R (2020) Angewandte Chemie International Edition 59(31):12885-12839 A Bioorthogonal Click Chemistry Toolbox for Targeted Synthesis of Branched and Well-Defined Protein–Protein Conjugates
Sperlea T, Muth L, Martin R, Weigel C, Waldminghaus T, Heider D (2020) Scientific Reports 10:6727 gammaBOriS: Identification and Taxonomic Classification of Origins of Replication in Gammaproteobacteria using Motif-based Machine Learning
Söhling N, Neijhoft J, Nienhaus V, Acker V, Harbig J, Menz F, Ochs J, Verboket RD, Ritz U, Blaeser A, Dörsam E, Frank J, Marzi I, Henrich D (2020) Materials 13(8):1836 3D-Printing of Hierarchically Designed and Osteoconductive Bone Tissue Engineering Scaffolds
Duarte Campas DF, Lindsay CD, Roth JG, LeSavage BL, Seymour AJ, Krajina BA, Ribeiro R, Costa PF, Blaeser A, Heilshorn SC (2020) Front Bioeng Biotechnol 8:374 Bioprinting Cell- and Spheroid-Laden Protein-Engineered Hydrogels as Tissue-on-Chip Platforms
Basavarajappa D, Uebbing S, Kreiss M, Lukic A, Suess B, Steinhilber D, Samuelsson B, Rådmark O (2020) PNAS 117(15):8573-8583 Dicer up-regulation by inhibition of specific proteolysis in differentiating monocytic cells
Murry CR, Agarkova IV, Ghosh JS, Fitzgerald FC, Carlson RM, Hertel B, Kukovetz K, Rauh O, Thiel G, Van Etten JL (2020) Viruses 12(6):678 Genetic Diversity of Potassium Ion Channel Proteins Encoded by Chloroviruses That Infect Chlorella heliozoae
Tran NT, Kaldenhoff R (2020) Scientific Reports 10(1):10688 Metabolic engineering of ketocarotenoids biosynthetic pathway in Chlamydomonas reinhardtii strain CC-4102
Yanakieva D, Elter A, Bratsch J, Friedrich K, Becker S, Kolmar H (2020) Scientific reports 10:10182 FACS-Based Functional Protein Screening via Microfluidic Co-encapsulation of Yeast Secretor and Mammalian Reporter Cells
Fröhlich K, Nasir S, Ali M, Ramirez P, Cervera J, Mafe S, Ensinger W (2020) Materials 617:118633 Fabrication of soft-etched nanoporous polyimide membranes for ionic conduction and discrimination
Sinzinger M, Gehri M, Koeppl H (2020) S. 2873-2878, ISIT'20 – International Symposium on Information Theory, virtual online conference, 21.-26. June 2020, ISBN 978-1-7281-6433-5 Poisson channel with binary Markov input and average sojourn time constraint
Bogen JP, Storka J, Yanakieva D,Fiebig D, Grzeschik J, Hock B, Kolmar H (2020) Biotechnology Journal 16(3):2000240 Isolation of Common Light Chain Antibodies from Immunized Chickens Using Yeast Biopanning and Fluorescence-Activated Cell Sorting
Sauer HM, Braig F, Dörsam E (2020) Advanced Materials Technologies 6(2):2000160 Leveling and Drying Dynamics of Printed Liquid Films of Organic Semiconductor Solutions in OLED/OPV Applications
Prangemeier T, Reich C, Koeppl H (2020) (wird in neuem Tab geöffnet) IEEE, International Conference on Computational Intelligence in Bioinformatics and Computational Biology, virtual Conference, October 27-29 Attention-Based Transformers for Instance Segmentation of Cells in Microstructures
Prangemeier T, Wildner C, Francani AO, Reich C, Koeppl H (2020) (wird in neuem Tab geöffnet) IEEE, International Conference on Computational Intelligence in Bioinformatics and Computational Biology, virtual Conference, October 27-29 Multiclass Yeast Segmentation in Microstructured Environments with Deep Learning
Busche JF, Möller S, Klein A-K, Stehr M, Purr F, Bassu M, Burg TP, Dietzel A (2020) Biosensors 10(10):135 Nanofluidic Immobilization and Growth Detection of Escherichia coli in a Chip for Antibiotic Susceptibility Testing
Bernhard M, Laube B (2020) Scientific Reports 10:16569 Thermophoretic analysis of ligand-specific conformational states of the inhibitory glycine receptor embedded in copolymer nanodiscs
Ulitzka M, Carrara S, Grzeschik J, Kornmann H, Hock B, Kolmar H (2020) Protein Engineering, Design and Selection 33:gzaa025 Engineering therapeutic antibodies for patient safety: tackling the immunogenicity problem
Gemeinsame Publikationen
- Krumbach JH, Bauer D, Sharifzadeh AS, Saponaro A, Lautenschläger R, Lange K, Rauh O, DiFrancesco D, Moroni A, Thiel G, Hamacher K (2023) J Gen Physiol. 2;155(10):e202313364. Alkali metal cations modulate the geometry of different binding sites in HCN4 selectivity filter for permeation or block.
- Weber W, Roeder M, Probanowski T, Yang J, Abujubara H, Koeppl H, Tietze A, and Stein V (2022) ACS Synth. Biol.6:2070-2079. Functional Nanopore Screen: A Versatile High-Throughput Assay to Study and Engineer Protein Nanopores in Escherichia coli.
- Sheng C, Mendler I-H, Rieke S, Snyder P, Jentsch M, Friedrich D, Drossel B, and Loewer A (2019) . Cell Rep. 27, 48–58.e7. PCNA-Mediated Degradation of p21 Coordinates the DNA Damage Response and Cell Cycle Regulation in Individual Cells
- Lehr F-X, Hanst M, Vogel M, Kremer J, Göringer HU, Suess B, Koeppl H (2019) ACS SynBio 8(9)2163-2173 Cell-free prototyping of AND-logic gates based on heterogeneous RNA activators.
- Schmidt M, Hamacher K, Reinhardt F, Lotz TS, Groher F, Suess B, Jager S (2019) IEEE/ACM Trans Comput Biol Bioinform Epub ahead of print SICOR: Subgraph Isomorphism Comparison of RNA Secondary Structures.
- Schönrock M, Thiel G, Laube B (2019) Commun Biol 2:75 Coupling of a viral K+-channel with a glutamate-binding-domain highlights the modular design of ionotropic glutamate-receptors
- Herzog N, Brilmayer R., Stanzel M., Kalyta A., Spiehl, D., Dörsam E, Hess C, Andrieu-Brunsen A (2019) RSC Advances 9:23570-23578 Gravure printing for mesoporous film preparation
- El Khoury M, Winterstein T, Weber W, Stein V, Schlaak HF., Thiel G (2019) The Journal of Membrane Biology 252,:2-3 Photolithographic fabrication of micro apertures in dry film polymer sheets for channel recordings in planar lipid bilayers
- Boussebayle A, Torka D, Ollivaud S, Braun J, Groher F, Dombrowski M, Hamacher K, Suess B (2019) Nucleic Acids Res 47(9):4883-4895 Next-level riboswitch development – Implementation of Capture-SELEX allows fast and easy identification of a new paromomycin riboswitch.
- Jaeger J, Groher F, Stamm J, Spiehl D, Braun J, Dörsam E, Suess B (2019) . Biosensors (Basel) 9(1) pii: E7 Characterization and inkjet printing of an RNA aptamer for paper based biosensing ciprofloxacin
- Falk J, Bronstein L, Hanst M, Drossel B, Koeppl H. (2019) J Chem Phys 150(2):024106 Context in synthetic biology: Memory effects of environments with mono-molecular reactions.
- Hofmann A, Falk J, Prangemeier T, Happel D, Köber A, Christmann A, Koeppl H, Kolmar H (2019) Nucleic Acids Res 47(1):509-520 A tightly regulated and adjustable CRISPR-dCas9 based AND gate in yeast
- Groher A-C, Jager S, Schneider C, Groher F, Hamacher K, Suess B (2018) . ACS SynBio doi: 10.1021/acssynbio.8b00207 Tuning the Performance of Synthetic Riboswitches using Machine Learning
- Porro A, Saponaro A, Gasparri F, Bauer D, Gross C, Pisoni M, Abbandonato G, Hamacher K, Santoro B, Thiel G, Moroni A (2019) Elife 8 The HCN domain couples voltage gating and cAMP response in hyperpolarization-activated cyclic nucleotide-gated channels
- Groher F, Bofill-Bosch C, Schneider C, Braun J, Jager S, Geißler K, Hamacher K, Suess B (2018) Nucleic Acids Res 46(4):2121-2132 Riboswitching with ciprofloxacin-development and characterization of a novel RNA regulator.
- Ensinger W, Ali M, Nasir S, Duznovic I, Trautmann Ch, Toimil-Molares ME, Distefano GR, Laube B, Bernhard .M, Mikosch-Wersching M, Schlaak HF, El Khoury M (2018) Journal of Theoretical and Applied Nanotechnology 6: 21-28 The iNAPO Project: Biomimetic Nanopores for a New Generation of Lab-on-Chip Micro Sensors
- Gross C, Saponaro A, Santoro B, Moroni A, Thiel G, Hamacher K (2019) J Biol Chem 293(33):12908-12918 Mechanical transduction of cytoplasmic-to-transmembrane-domain movements in a hyperpolarization-activated cyclic nucleotide-gated cation channel
- Kumari B, John D, Hoffmann P, Spende A., Toimil-Molares ME, Trautmann C, Hess C, Ruff P, Schulze M, Stark R, Buntkowsky G, Andrieu-Brunsen A, Gutmann T ( 2018) Z. Phy. Chem. 232(7-8):1173-1186 Surface Enhanced DNP Assisted Solid- State NMR of Functionalized SiO2 Coated Polycarbonate Membranes
- Schneider C, Bronstein L, Diemer J, Koeppl H, Suess B (2017) ACS Synth Biol 6(7):1211-1224 ROC'n'Ribo: Characterizing a riboswitching expression system by modeling single-cell data.
- Weißgraeber S, Saponaro A, Thiel G, Hamacher K (2017) Sci Rep 7:40168 A reduced mechanical model for cAMP-modulated gating in HCN channels